CVS format

Added CVS format to HOMO-LUMO summary table in the verbose file so that
you can import easily to Matlab, Excel, Numbers and other applications.
Bug fixes

CVS bug fixes.
commit
HOMO-LUMO improvements
Merge branch 'GUI' into HOMO-LUMO-SP-COM
Partial implementation of condensed matrix
commit
Homo-Lumo improvements

-Now the log file is called log_<fileName>.txt.
-Now the logs are saved into the logs folder.
-Now you can read the extracted data in a txt inside the
data_<filename> folder.
-CSV format support for extracted data.
-Table support for extracted data.
-Bug fixes.
-Improvements.
Merge pull request #1 from Freyja-Folkvangr/HOMO-LUMO-SP-COM

New features merged.

-Now the log file is called log_.txt.
-Now the logs are saved into the logs folder.
-Now you can read the extracted data in a txt inside the
data_ folder.
-CSV format support for extracted data.
-Table support for extracted data.
-Extract Condensed to atoms matrix.
-Minimal support for fragments and counterpoise.
-Bug fixes.
-Improvements.