Convert wrapper function to TrackMate v 2.5
Eliminate unused parameter to avoid confusion
Add suppress warnings to convertToValue(String,Field)

deprecated but don't want to use the service.
Convert wrapper function to TrackMate v 2.5

Should have been committed with previous.

Also eliminates override of versant for imagej-ops and free chart to
ensure that the "best" version for imagej2 is always used (brought in
via "dependency" import in pom-jex)
Add types to eliminate warning
Add JEXData.ANY Type

This allows generic inputs to plugin functions (i.e. arguments that
could be an image or a file or a....) The JEXData.ANY Type is not
intended to be used for creating objects that would be saved in the
database.
Add Script Parameter type

The widget for the Script parameter type is a pop up text editor so
that you don't have to try and enter a script using a single line text
field.
Duplicate ParameterSet template

Without duplicating it, each JEXPlugin instance of the same type shares
the same ParameterSet so all repeated JEXPlugins in a workflow share
the same set of parameters. This fixes the bug and allows them to have
their own set of parameters.
Catch empty PointList condition

Before, and empty PointList would cause an error and return of the
function when this condition should be caught and the function should
continue.
Allow return of non-8-bit images.

Everything was converted to 8-bit before inversion. Now we invert and
then save to the user provided output bit depth.
Allow user cancelation
Make Color Dim Name and Time Dim Name parameters optional

Also fix test of input type from 'equals' to 'matches', checking for
null as well.
Move to Single Cell Analysis toolbox
Reverse order of inversion and BG subtraction

Should invert then BG subtract rather than the opposite to create a
more uniform background intensity in the final image. Also, subtract 2
times median given the median roughly represents 3 sigma. Subtracting 1
median brings you back to the point where the background would be
centered at 0 whereas subtracting 2 sigma would bring you back to where
the BG + ~3 sigma will be at 0
Allow removal of Color Dim Name from output image

Also fixed small logging inconsistency
Remove unused input to function
Add type parameters

Eliminate warnings
Add methods for use with "Measure Secretion" JEXPlugin

Primarily related to thresholding and filtering a double[]
Add static list of possible tif compressions

This way you don't have to look up the possibilities in the R
documentation of the associated function
Add ability to scale and rotate relative to image origin

This is useful when working with images of different scales but you
want to use the same ROIs that might have been defined on different
scales.