Refactoring where the loading of the embedded ontologies takes place
Removed unused import following refactoring
Fetch embedded ontology from ontology IRI when the original source IRI fails
Updated and re-activated test for LoadEmbeddedOntologies
Don't try and fetch ontology from ontologyIRI if it is the same as the source IRI that already failed
Should also use the apikey when accessing an ontology via the old bioportal API url
Bumped network timeout from 30 to 120 seconds
Just log an OWLOntologyAlreadyExistsException when loading embedded ontologies

rather than popping up an error box
Updated bioportal ontology format cache, and put logging back to warn
Detect and replace old bioportal api download links with the new

With the help of a mappings file between the old virtual ontology id's
and the new acronyms
Updated copyright dates