add option to put rank on alignent input in streaming bam duplicate marking
bump version after adding option to put rank on alignment input in streaming bam duplicate marking
bump version after adding option to put rank on alignment input in streaming bam duplicate marking
- add LIBMAUS_BAMBAM_FCIGAR32 flag
- refactor BamAlignmentReg2Bin class
- partial implementation of 32 bit cigar string length
add timing test for line counting
do not compute bin when read is unmapped
remove file which should not be in experimental branch
reorder include directives
- reorder include directives
- add encoding of long cigar strings
add documentation
add line splitting output stream
- fix line splitting output stream
- add line splitting gzip output stream
- add tests for line splitting output streams
bump version after adding line splitting output streams
Merge branch 'experimental' into experimental-debian
bump version after adding line splitting output streams