Added comments to mirror tutorial.
All the bits are there. Now to get it all working

Conflicts:
	biotestmine/setup.sh
A fully working boostrap script.
Build fails without this file
Build fails without these dummy files.
Better setup.sh, learning lessions from biotestmine

Conflicts:
	testmodel/setup.sh
A superior bootstrapping experience.

Conflicts:
	testmodel/setup.sh
Improved readme
For some unfathomable reason none of this was committed.
Added test for integration key.
Merge branch 'beta' of github.com:intermine/intermine into biotestmine
Better handling of db encodings. Less verbose output.
checkstyle
refs #452
Merge branch 'beta' into biotestmine

Conflicts:
	testmodel/setup.sh
remove metabolicmine and mastermine, these are in their own reposistories now.
add optional parameter to portal URLs to allow users to filter by organism
Merge pull request #677 from intermine/i452

Don't run extra queries when running LOOKUP queries with wildcards
checkstyle
fix regular expression. Refs #692