switched from using scanners to inputstreams on reads to improve memory usage and read speed. it turns out that weird memory usage on genome read is from the reader, not the data being in memory. fixed error in reading bed format peaks
created distributable file with the core executable jar
Working on adding command mode to jprobe core. Working on implementing CommandManager.
command line and interactive seem to be working as intended. fixed bug in GenomicRegion string parsing
Can now read peak seqs from the genome using command line in jprobe