New Entry: HO2_Elimination_from_PeroxyRadical/training/2

Updated rate rule for CCCC(O[O])O = CCCC=O + HO2

Submitted through the RMG website.
New Entry: HO2_Elimination_from_PeroxyRadical/training/3

Updated rate rule for CCCC(O[O])O = CCC=CO + HO2

Submitted through the RMG website.
New Entry: intra_H_migration/training/2

Updated rule for CCC(O[O])CO = CCC(OO)C[O] (waddington reaction)

Submitted through the RMG website.
R_Recombination/training:4 Updated rate with atom starring in forward direction for CCC[C]O + O2 = CCCC(O[O])O

Change to kinetics/families/R_Recombination/training entry 4 submitted through RMG website:
Updated rate with atom starring in forward direction for CCC[C]O + O2 = CCCC(O[O])O
Connie Gao <connieg@mit.edu>
Remove training reaction 2 from intra_h_migration due to lack of atom labels.
Remove 2 training rxns from ho2_elimination family due to atom starring errors
Added the PrimaryTransport and GRI-Mech3.0 Libraries for transport properties

The primaryTrasnportLibrary and GRI-Mech3.0 sets up TransportData
objects for small molecules with known transport properties.  This data
was transferred over from RMG-JAVA\RMG_Database\transport_libraries\
Both the .dictionary and .library files for each library has been
combined into one python file.
Added the nonring and ring group data to the transport groups database

This data came from the old RMG database and I used a script to convert it into the new python format.  It represents the critical point group contributions.
Replace 'molecule' with 'group' in transport groups database.
Added units to transportData properties and fixed capitalization mismatch errors

Units for sigma, epsilon, dipoleMoment, and polarizability were added to the transport libraries and missing groups to descend the tree were added to the transport groups
Changed units for transport epsilon property to J/mol
Added nitrogen to allow for pDep calculations
Added fictitious transport group for R=C=R in a ring.

Without this existing, things like 1C=CCCC=C1 crash.
Not sure what its value should be.
Add comments to transport groups databases.
Added triple bond in a ring to the transport group estimates database.

Had to invent the numbers (copied C=C in a ring).
Change units of polarizability in transport libraries.

These are in fact "polarizability volumes" in units of Angstrom^3
Merge branch 'transport'

This brings in transport libraries, and methods to estimate transport parameters.
New file abraham.py

Will contain solute descriptors based on Abraham (1993)
Began entering solute descriptors for fragments

From Platts (1999)
Added Platts' C,H,O groups