Fix #11989: set PYTHONPATH once on Windows.
Ressurect setpythonpath.bat.
Bugfix: Userspecified file name was not passed to ImportContainer
Added Mark's suggestions for better efficiency
Update slf4j (1.7.6) and logback (1.1.1)
Add finalising session marker to import log.
Merge pull request #2169 from ximenesuk/update-logback-dev

Update logging jars (rebased)
Update develop submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating c81b9ec..5347672
Merged PRs (fast-forward):
  # PR 959 melissalinkert 'CZI: make sure that SubBlocks are correctly initialized in openBytes (rebased onto develop)'
  # PR 950 melissalinkert 'Cellomics: a few fixes for single-file datasets'
  # PR 974 ximenesuk 'Update logging jars (rebased)'
  # PR 977 hflynn 'Fix links to Zeiss image browser software (rebased onto develop)'
  # PR 962 rleigh-dundee 'C++: Add FormatReader interface and associated classes'
  # PR 964 melissalinkert 'Log the expected and actual values in failed metadata tests (rebased onto develop)'

Repository: ome/scripts
Updating b78c468..1878321
Merged PRs (fast-forward):
  # PR 69 will-moore 'Kymograph analysis march 12th'

Repository: openmicroscopy/ome-documentation
Updating 3689d53..8435d81
Merged PRs (fast-forward):
  # PR 694 hflynn 'Suggested mailing list note update (rebased onto develop)'
  # PR 697 rleigh-dundee 'limitations: Document fileset log file workaround (develop)'
  # PR 695 hflynn 'Adding Graphviz to Docs repo readme (rebased onto develop)'
  # PR 693 sbesson 'Update importer-cli usage text (rebased onto develop)'
  # PR 683 sbesson 'Add directed graphs for Bio-Formats latest jobs'
  # PR 690 bpindelski 'Update OMERO.grid doc (rebased onto develop)'

Generated by OMERO-5.1-latest-submods#54 (http://ci.openmicroscopy.org/job/OMERO-5.1-latest-submods/54/)
Merge pull request #2151 from snoopycrimecop/merge/develop/submodules

Update develop submodules
Merge pull request #2174 from bpindelski/11989_omero_bat

Fix PYTHONPATH whitespace issue on Windows (see #11989).
Merge pull request #2162 from dominikl/path_on_import_selection

Bugfix: Image import: File naming settings were ignored
fix 12051: close img tag
Merge pull request #2186 from mtbc/trac-12051-close-img-tag

fix #12051: close img tag (rebased)
merge develop -D none -I melissalinkert/bioformats:bug-fixes

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2189 dominikl 'Bugfix: Weird behaviour after switching users' (user: dominikl)
  # PR 2177 chris-allan 'develop: Update upgrade check handling in OMERO.web' (user: chris-allan)
  # PR 2165 dominikl 'Inplace file path' (user: dominikl)
  # PR 2161 aleksandra-tarkowska 'Minify viewer media' (user: aleksandra-tarkowska)
  # PR 2128 jburel 'Open with develop' (user: jburel)
  # PR 2178 snoopycrimecop 'Update develop submodules' (user: snoopycrimecop)
  # PR 2127 dpwrussell 'Working view to email announcements to selected users, groups, email addresses and/or all users' (user: dpwrussell)
  # PR 2171 dominikl 'Added ROI filtering option' (user: dominikl)
  # PR 2036 joshmoore 'DSL Map Type' (user: joshmoore)
  # PR 2182 joshmoore 'Read only flag' (user: joshmoore)
  # PR 1385 manics 'Update the OMERO VirtualBox image' (user: manics)
  # PR 1960 will-moore 'Remove cut link 11882' (user: will-moore)
  # PR 2188 ximenesuk 'Close the RFS and kill the root session.' (user: ximenesuk)
  # PR 2160 dominikl 'Warning dialog before deletion of linked images' (user: dominikl)
Updating 279929c..fdc305a
Merged PRs (fast-forward):
  # PR 2186 mtbc 'fix #12051: close img tag (rebased)'
  # PR 2162 dominikl 'Bugfix: Image import: File naming settings were ignored'
  # PR 2174 bpindelski 'Fix PYTHONPATH whitespace issue on Windows (see #11989).'
  # PR 2151 snoopycrimecop 'Update develop submodules'
  # PR 2169 ximenesuk 'Update logging jars (rebased)'

Repository: openmicroscopy/bioformats
Excluded PRs:
  # PR 973 rleigh-dundee 'C++: Fixes for the OME-XML model and metadata store interfaces' (user: rleigh-dundee)
  # PR 858 melissalinkert 'Initial support for Veeco AFM data' (user: melissalinkert)
  # PR 528 melissalinkert 'Tile performance improvements for VMS and NDPI' (user: melissalinkert)
  # PR 970 rleigh-dundee 'C++: Add FormatReader implementation' (user: rleigh-dundee)
  # PR 816 melissalinkert 'Add support for multi-channel Volocity Clipping datasets' (user: melissalinkert)
  # PR 975 rleigh-dundee 'cpp: cmake: Don't enable -pedantic if it breaks long long use' (user: rleigh-dundee)
  # PR 978 berl 'Add writing of .v3draw format for easy loading with Vaa3D.' (user: berl)
  # PR 857 melissalinkert 'Initial support for Zeiss .lms files' (user: melissalinkert)
  # PR 981 melissalinkert 'Ignore namespaces when filling in an XMLAnnotation's Value' (user: melissalinkert)
Updating 5347672..7e63798
Merged PRs (fast-forward):
  # PR 859 melissalinkert 'Assorted metadata/tile parsing fixes'

Merged Branches:
melissalinkert:bug-fixes

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Excluded PRs:
  # PR 626 pwalczysko 'Add new Squash tutorial and screenshots' (user: pwalczysko)
Updating 8435d81..7a0521c
Merged PRs (fast-forward):
  # PR 701 bpindelski 'Remove paragraph about whitespace and Ice.'
  # PR 699 sbesson 'Contributing: CI restructuring'
  # PR 700 joshmoore 'Fix Windows paths error found by Javier Colmeiro (rebased onto develop)'