Merge pull request #148 from levinas/master

refactoring, tagging, versioning, validation and support for json input
Merge pull request #150 from levinas/master

document update and pipe exception handling
add automated test

Link: https://github.com/kbase/assembly/issues/172
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
create automated robot tester

Link: https://github.com/kbase/assembly/issues/172
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add the integration test for uploads to the automated test

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
create a new integration test

Link: https://github.com/kbase/assembly/issues/170
Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
Merge pull request #178 from sebhtml/automated-tests

Automated tests
Merge branch 'kbase' into ff
a6 upgrade; temporary fix for outputing a5 and a6 scaffolds as contigs
fix thread number for quast
change status 'queued' to 'Queued'
fix status message for legacy jobs
add endpoint argument for run-quality-assurance-program.sh
test_library includes perl 'ok/not ok' stats
remove debug lines
keep nightly tests lightweight
compile mummer when installing quast
make sure insert information in typespec is used
add test for a5 and a6
Merge pull request #185 from kbase/dev

bug fixes for nightly tests
kiki recipe