Add /MovieInfo/FrameRate to cmp.h5 file when quality values are loaded.	
   bug 22429

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 130301]
Add filterAdapterOnly to samFilter in order to remove reads which 
only can map to adapters specified in a gff file.
bug 24093

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 130424]
   Add a cram test for samFilter -filterAdapterOnly
   bug 24093

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 130432]
   Update m1, m4 and m5 headers to Camel format.
   bug 18909	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 130654]