Use a cache for the factorial method
Change the location of the rChart libraries to make them accessible from the webserver
Fix indentation
Avoid SQL injection
Allow comments in probeid input files
Added --out_dir option and switch to Data::UUID for default dir name

The interface now allows to specify the output directory. This is much easier for the
web interface. In addition, the dependency to DataTime is now gone as we rely on
Data::UUID to create a new unique directory name if need be.
Option proxy is now a string.
Fix indentation
Move warning message from module to main script
Add warning messages for tracking progress on the web interface
Speed up eForge::process_bits

There is a very small gain in using substr rather than split. The major gain is in
the new "if" clause within the foreach loop. It is only true if the bit is 1 (as the
bit can only be 0 or 1) and will therefore increment the counter for that cell and
push this probe to the list of MVPs for that cell.
Template module to create quick UCL-like web site with a Perl CGI.
Working version of the cgi-bin for the eforge.cs.ucl.ac.uk site

In this version, the R code to generate the ussage plots is in a separate
script, although this might change in the future (to make the installation
easier).
New --web flag for web-server specific options

A new --web flag is available to run code that is specific to the web server and
that breaks the standalone version of eforge.pl
Change default data directory to cwd

By default, look for the DB files in the current working directory.
This will work if the tool is used from within the installation
directory.
Roll back the change on the sed command line

The Mac version of sed wants ' -i "" ' while the linux version wants ' -i"" ' instead.
Merge pull request #3 from jherrero/master

All changes made for eforge.cs.ucl.ac.uk