[API] new base class and classes for centroided and profile input data added
[INTERNAL] clean up
[API] second MultiplexClustering constructor added
[INTERNAL] new clustering constructor used
[API] separate generateMaps methods for centroided and profile data
[API] back to single generateMaps methods
[API] back to single generateMaps methods
[INTERNAL] debug code removed
[API] base class moved to MultiplexFiltering
[DOC] documentation updated
[DOC] documentation updated
[TEST] class tests updated
[INTERNAL] one include removed
[DOC] constructor documentation updated
[NOP] uncrustified
[INTERNAL] do not read MS2 in the first place
[NOP] uncrustified
Merge pull request #1087 from lars20070/feature/FeatureFinderMultiplex_picked2

centroided input data for FeatureFinderMultiplex
[FIX] turned FileConverter's 'write_mzML_index' flag into an actual flag (not a string option)
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop