make snap check read names instead of ignoring them
fix read files if unmatched pairs are found
merge blahah/master
remove samtools readsort
tidy up fix trinity output
update bam-read dependency version
add new options for snap multiple read alignments
fix snap output if express fails
make sure coverage isn't NaN
comments in sam checker
fix read pairing tags in test data
make fixer an ivar
raise errors instead of warnings when crucial steps fail
require SNAP beta14
put readsorting back in before express
set new snap version requirement; bump version
Merge pull request #100 from cboursnell/master

Proper reads pairs (broken)