Fixed small typo
Changed repository from thehyve to transmartfoundation
[FT-319] Implement architectural decision, on how to retrieve data from back-end (genome browser)

Transmart changes to support genome browser
[FT-319] Implement architectural decision, on how to retrieve data from back-end (genome browser)

Add chromosomal segment
Make build well-defined

Set compiler plugin version and source encoding.
introduction of molecular data type for RNASeq data
Revert "introduction of molecular data type for RNASeq data"

This reverts commit 2ea5eeb7bf43ddac4d5404996ed0a182ecacf637.
DeGplInfo: swap genome_build with release_nbr

Synchronize with the schema in transmart-data.
Add sampleCode property to Assay
Deprecated stuff fot the old high dim API

Though there's no way to query for aCGH data through the new interface
at this point.
Add new high dimensional data retrieval API
Merge branch high_dim_new_api into thehyve/master
Add well-known data constraint: disjunction
Disjunction constrint spec changes

Described how several subcontraints of the same type are to be
specified.
Remove old high dim api; adapt acgh stuff to new 1
Add property Assay.patientInTrialId
Add gene, protein and analyte data constraints constants
Move Region to anoth. package; rem redundant field
Add HighDimensionResource::getKnownTypes()
Region::getNumberOfProbes() is needed after all