Update plot.bammdata to return colorbreaks
Update plot.bammdata to return colorbreaks
Convert for-loops to lapply results in significant runtime improvements for larger datasets.
Hardcode the tolerance since the way the tolerance is currently being inferred automatically appears to cause problems on occasion.
Merge branch 'master' of github.com:macroevolution/bamm
Add tol value to rate functions
Externalize some additional plotting parameters, such as cex.lab and lwd for label size and line width.
Change axis labels, and add ability to not have axis labels, giving the user more flexibility.
Fix documentation to plotRateThroughTime to reflect recent changes.
Fix issue with time axis.
Fix "polytomy" msg for trees with dos line endings

This is a band-aid patch that only papers over the real problem.
Tweak the example for plotRateThroughTime.R
Merge pull request #84 from jonchang/patch-1

Fix "polytomy" msg for trees with dos line endings
Replace & with &&
Merge branch 'master' of github.com:macroevolution/bamm
Merge branch 'master' into mc3
Simulate priors after MCMC has run
Update CMakeLists.txt for Windows
Declare variable as int, not double
Add plot.bammshifts and deps to package skeleton.