resync with stuff moving from IRanges to S4Vectors

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epivizr@89256 bc3139a8-67e5-0310-9ffc-ced21a209358
Delete TODO
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    Commit id: e9053fa44a9ae9cce19bb96232b21675bf09411b
    Commit message:
    Delete TODO
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-20T14:35:29-04:00

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git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epivizr@89269 bc3139a8-67e5-0310-9ffc-ced21a209358
Update README.md
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    Commit id: b2c9079e62fbf2c8343f961efb55aa0f808141a1
    Commit message:
    Update README.md
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-20T14:42:00-04:00

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git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epivizr@89270 bc3139a8-67e5-0310-9ffc-ced21a209358
* version bump
* fix use of wait_until in 'test-server.R'
* all tests pass with post R-3.1 release
use explicit 'S4Vectors:::isNotSorted'
Commit made by the Bioconductor Git-SVN bridge.
Consists of 1 commit(s).

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    Commit id: 7505533f9faf63de9f3f3d39979fdf38d17761cb
    Commit message:
    use explicit 'S4Vectors:::isNotSorted'
    Committed by hcorrada <hcorrada at gmail.com>
    Commit date: 2014-04-21T18:28:49-04:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/epivizr@89326 bc3139a8-67e5-0310-9ffc-ced21a209358
Merge branch 'master' into newProvider
server test works again
connection through 'EpivizDeviceMgr' works again
measurement mgr for blocks ok
measurement management ok for bp data
measurement mgr ok for feature data
getRows for blocks ok
getValues ok for feature data
before cleanup
refactored sorting and fixed update
navigate and slideshow updated to v2
server and register test passed