remove old result
fa file of gene family used to get gene tree
species tree file
remove old filter_newick.parser.out.pl to update new
new filter_newick.parser.out.pl can use full_index to format entry
index file for identify entry
some file produced by the pipeline
some file produced by pipeline
new pileline after entry identified
Merge branch 'master' of github.com:daweih/plantortho