add base logic for multi parent species
erase #additional_lines method and inject them logic to #creation_lines method
move logic of iteration through phase instance into instance
move logic from dependent wrapped to separated essence class
move get anchors logic to essence
Merge branch 'split' into essence
add twins helper
fix atom and bond indexes for correct saving mol format
fix actives ratio
add #excess_position? logic to minuend#- implementation
rename #clean_graph to #algorithm_graph
fix docs
fix when no rest then #cut_graph gets a clean_links of specie
add script for making image for each data file in some directory
Merge branch 'code' into essence
fix pymol image saver for case when output image already exists
Merge branch 'code' into essence
move #clean_links method to SpecResidual
fixes and comments and add #flatten? method to Lattices::Base
erase clearing_atoms variable from #algorithm_graph