Added all package to autobuild.
Create pft folders in read.settings (fixes #985)
Completion of model2netcdf.SIPNET.R
Updates to documentation models/ed to update change in function names.  Check on package now completes
Update to write.config.SIPNET.R.
added example using test.settings.xml, refs #1124
wrote test for #1135
fixes #1144 by removing blank pft
closes #1144 by adding tests that a) test.settings.xml has one unique outdir per pft
added example using test.settings.xml to read.settings (refs #980)
fixed minor bug in test.read.settings.R
#1142: implemented first pass at read.output.SIPNET, still need to generalize the netCDF read to it's own function and deal with date ranges
merge
moved model->ed->get.results.ed to utils -> get.results because there didn't appear to be anything model-specific in the function
refs #1444 by adding additional tests to check functionality of read.settings
fixed bugs related to #1444
removed references to pretty.hack
convert read.sa.output, read.ensemble.output, get.results to read model as an input; get.model.output.SIPNET appears to be working
merge
commented out test that was causing an error