Limiting tests to opt and oprof (closes #2653)
Merge pull request #2654 from aeslaughter/dbg-par-2653

Limits tests to opt and oprof
Removed PETSc types (closes #2665)
Merge pull request #2666 from aeslaughter/petsc-2665

Removed PETSc types
Move from gap to paired in name #2667
Added guard for PETSc related calls
Dummy #000
Added inline ability for residual output (#2664)
Merge pull request #2672 from aeslaughter/iter-2664

Added inline ability for residual iteration output
Resolved creation of adapted mesh with oversampling (closes #2646)
Merge pull request #2673 from aeslaughter/orig-mesh-2646

Resolved creation of adapted mesh with oversampling, this is needed to get MARMOT completely updated.
Merge pull request #2669 from jasondhales/paired_2667

Move from gap to paired in name #2667
Clean up aniso heat conduction #2674
PlenumPressure initial temperature #2677
moved remainder of richards tests to richards/tests

moved richards tests to richards/tests and cleaned up buckley_leverett/bl22.i tests that was failing because of new Outputs format.  This should close ticket #2679
Merge pull request #2675 from jasondhales/aniso_2674

Clean up aniso heat conduction
Merge pull request #2680 from WilkAndy/feature_2679

moved remainder of richards tests to richards/tests
Allow the user to set mpi command through the environment - closes #2676
fix adding items in Peacock closes #2685
fixup output file name generation closes #2685