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	modified:   .pydevproject
new file:   BamSorter/__pycache__/BamSorter.cpython-33.pyc
	new file:   BamSorter/__pycache__/__init__.cpython-33.pyc
	modified:   Chr_NexusEncoder.py
	new file:   Chr_NexusEncoder.py.bak
	new file:   ClusterPattern.py
	new file:   ClusterPattern.py.bak
	new file:   ClusterSimulations.py
	modified:   ConsensusChopper/ConsensusChopper.py
	new file:   ConsensusChopper/ConsensusChopper.py.bak
	modified:   ConsensusChopper/FqBlock.py
	new file:   ConsensusChopper/FqBlock.py.bak
	modified:   ConsensusChopper/FqFormatter.py
	new file:   ConsensusChopper/FqFormatter.py.bak
	new file:   ConsensusChopper/__pycache__/__init__.cpython-33.pyc
	modified:   Duplicator.py
	new file:   Duplicator.py.bak
	modified:   GriggsLoader.py
	new file:   GriggsLoader.py.bak
	modified:   IntactClusters.py
	new file:   IntactClusters.py.bak
	modified:   MCLCounter.py
	new file:   MCLCounter.py.bak
	modified:   NexusEncoder.py
	new file:   NexusEncoder.py.bak
	modified:   Q2A.py
	new file:   Q2A.py.bak
	modified:   ReadCoverage.py
	new file:   ReadCoverage.py.bak
	modified:   Runner.py
	new file:   Runner.py.bak
	modified:   SnpSorter.py
	new file:   SnpSorter.py.bak
	modified:   SummaryStats.py
	new file:   SummaryStats.py.bak
	modified:   TesterScript.py
	new file:   TesterScript.py.bak
	new file:   VCFreader/__pycache__/__init__.cpython-33.pyc
	new file:   __pycache__/Chr_NexusEncoder.cpython-33.pyc
	new file:   __pycache__/ClusterPattern.cpython-33.pyc
	new file:   __pycache__/ClusterSimulations.cpython-33.pyc
	new file:   __pycache__/IntactClusters.cpython-33.pyc
	new file:   __pycache__/MCLCounter.cpython-33.pyc
	new file:   __pycache__/NexusEncoder.cpython-33.pyc
	modified:   similarity.py
	new file:   similarity.py.bak