_compare_set_for_rollback: removed comments; improved errors/debug; fixed  test;\nfixed rollback_FeatureSet\nFixed full delete mode in _validate_rollback_Set
Fixed check_file gunzip bug. Refined _handle_exist_status, run_backtick_cmd and run_system_cmd; change convert_strand_from_bed to convert_strand
now use EFGUtils::convert_strand
Added is_idr_ResultSet. Moved ALIGNMENT satus validation from get_alignment_files_by_ResultSet_formats to get_alignment_path_prefix_by_ResultSet; Updated init_branching_by_analysis to enable branching by branch number and name at the same time. Hardened _set_out_db eval. Garbage removal now ues unlink instead of rm
Fixed slice_object and get_Slice. Added name validation to fetch_Set_input, fixed absent set_param methods calls for sets and removed more InputSet references
Removed input_set references. Added call to init_branching_by_analysis. Added format conversion checking to avoid race conditions.
Added missing ALIGNED status
Now uses EFGUtils::Get_set_prefix_from_Set. Simplified control experiment retrieval. Added missing %batch_params to branch 2 dataflow
Overhaul. Moved a lot to SeqTools and fixed many bugs
Overhaul. Moved a lot to SeqTools and fixed many bugs
now unlinks tmp files
Major revision to get Collection import working without InputSets. This needs fixing properly as is now broken for InputSet imports which have been deprecated
removed dirty 75 fix. count now returns updated count.
Added vendor parser test. Hardened vendor parser package eval. slice cache now always returns hashref
updated unput_set to input_subset support
set_imported_states_by_Set now stored IMPORTED status too. store_status, revoke_states and revoke_state validates success.
added _fetch_dbfile_data_dir. store_dbfile_data_dir now validates success using eval and tries ot handle failures due to race conditions which have stored the correct data. Other format and syntax refactoring