implemented affine gap distance function w/ probable bugs. 0.0297 precision and 0.982 recall
using more efficient way to copy arrays (deepcopy is expensive), wrapped main process in to run() function
speed, bug, and normalization
removed some mins for performance
incorrect indexing in update of f_matrix
more bugfixes and moved last min
removed invalid comments
bugfix in V_matrix recurrence
bugfix in assigning f = v_matrix[0]
added test conditions
uncommented performanceTest
change number of iterations in performanceTest
some more speedups
more speedups
added short circuiting if strings are the same
readability
updated default affine weights
rebuiod affinegap
started playing around with a different edit distance
fixed some big bugs