Merge pull request #9 from bjpop/master

Fixed error in argparse help message for min_coverage and max_divergence...
update for paper submission

databases, max mismatches
Merge branch 'master' of https://github.com/katholt/srst2

Conflicts:
	scripts/plotSRST2data.R
	scripts/srst2.py
	scripts/version.pyc
update example
bug checking - faidx command
report maxMAF to fullgenes table
fix reading csv
accommodate maxMAF when parsing MLST from compiled output
handle maxMAF in compiled reporting
maxMAF in compiled reports
fix maxMAF handling in MLST & compiled reporting
update version to 0.1.4
update readme for v0.1.4
added details of new databases
added details of resistance databases throughout
update install
added BioRxiv citation
add section links
Update README.md
Update README.md