Fixed a bug in update_pickles where the name was pointing at a gene not a string
Merge pull request #28 from danielhyduke/master

Fixed a bug in update_pickles where the name was pointing at a gene not ...
Bug fix to address issue https://github.com/opencobra/cobrapy/issues/29 and to address a similar problem with the _genes attribute
Merge pull request #30 from danielhyduke/master

patch for [cobrapy] reaction stoichiometry doubled on deletion (#29)
remove dist directory

Binary assets such as an egg should be downloaded from other sources
(where downloads are tracked). Additionally these do not need to be
version controlled.
load gene reaction rule from mat
Merge pull request #31 from aebrahim/gpr_load

load gene reaction rule from mat
update ez_setup.py
suppress stderr from git describe in version
add setuptools installation to gitignore
Merge pull request #33 from aebrahim/install_update

Install update
deprecated the assess_objective function and added in a reaction module with assess functions
update_pickles.py now uses legacy sbml for iJO1366

This prevents reaction names with _LPAREN_e_RPAREN_ for exchange
reactions.

The pickles were also all updated.
update file permissions
add conditional test for ABBREVIATION in sbml

Causes gene reading to fail when loading sbml when "ABBREVIATION" was missing
Merge pull request #37 from pillmill/sbml_bugfix

add conditional test for ABBREVIATION in sbml
sbml loads charges from notes

If the charge is specified in the notes field, it will be saved as
metabolite.charge (which is what happens for charges specified as sbml
attributes).
unit tests are less verbose
ensure metabolites are added even with bad charge

add unit test to ensure this behavior as well
update pickles - iJO1366 should now have charge

Due to the previous commits, the iJO1366 model should now have charges
specified for the metabolites due to the structure of the xml file from
which the model was based.