multivariate analysis data manipulation

You can't make an omelette without breaking eggs. There is a plan, in
case you read this Jonathan
Merge pull request #1 from jmarshallnz/master

Your first pull request!
anova analyses of case data

Not sure if this is correct. Seems logical to me, though the data
manipulation is clunky. Categorical explanatory variables with
interactions. Interestingly interactions seem unimportant.
addition of glm with poisson error

odd difference in results using summary and summary.lm
minor alteration to "summary"
Maps and draft interim report code

Lots of stuff
deleted files

seems to require that I do this
adds a bit of code to get around the silly comma problem in the immigration data
not sure why it wants me too sync this...
Clean(er) map code with silly comma fix

Deleted large sections which did not map appropriate data
Revise interim report Rnw with mapdata

Some of the functions for creating maps were not working through Rnw
Seave, so I made separate results files to work from.

The interim report begins to include material from previous reports and
work on R0.
update extraction of data to do various plots
adds JM version of realtime R0 estimation
adds graphing of R0 through time per epidemic, and average R0
Revised Sweave report for work at home

Better plot dimensions too. Will include JM's work later tonight.
Summary data, figures, and revised report code

Include summary data and figures in PDF form to work into the report
without having to reload the data.
R0 figures included

Included R0 estimation and figures in the report text.
Times series immigration to NZ and global measles

Minor revisions to some other code and analyses of the global change in
measles incidence and changes in NZ immigration
Cost analyses from Tim included

Edited interim report with additional tables and figures.
Draft Interim Report

Draft with no references in it. I am working on them in a text file and
will paste in later.