in the process of writing files for simulation analysis

	new file:   analysisHP.py
	new file:   clusteredHP.py
	modified:   hp-model-scripts/HPlibraryReader.py
	modified:   parameters.ini
	modified:   plotData.py
	modified:   plotHPData.py
	modified:   routes.py
Merge branch 'master' of https://github.com/abernatskiy/pdmmod