add suggestions from Nate
cleanup -

  remove unnecessarily large test package
  replace with small test package
  be sure example code is parsed correctly
cleanup
add another test file
add option to disable biocViews checks
check for T and F
formatting
broken commit
add NOTE about eval=FALSE chunks
formatting cleanup, suppress more codetoolsBioC warnings
Check for incorrect use of Depends, such that a package depending on
the checked package would have a problem unless the package in the incorrect
depends was imported in NAMESPACE. Still need a unit test for this.
Thanks to Martin for the basic idea of this.
test files, algo notes
cosmetic
more algos
run normalizePath on package dir so that "R CMD BiocCheck ." will work
Add unit test for checking bad dependencies.

Some work on finding library(mypkg).
Fixed loophole in library(pkg) search.

Deactivated a test until I can refactor some code.
unit tests now pass
integrate library/require checking
checking function lengths