added report_engine, switch to CGATReport
pep8 changes
switch to CGATReport
started pipeline_genesets
pep8 changes
Merge branch 'master' of ssh://github.com/CGATOxford/cgat
pep8 changes
merge Andreas changes
fixing MEDIPS wrapper
fixing MEDIPS wrapper
added line check to testing
changed to CGATReport; removed some unnecessary files
Expression.py - sorted output
added scripts/cgat_file_apply.sh
fix calibration output