Remove the #define-d constants MAXITER, EPS and CHOLTOL from ProbABEL's main().
CHOLTOL is only used by the cox regression module, now that we moved to EIGEN-only, so it makes sense to define it as a constant in the coxph_data class.
MAXITER and EPS are used for logistic and Cox regression, so they are only defined in the logistic_reg and coxph_data classes.

This simplifies the estimate() and score() function calls, because they don't need these parameters anymore and as a result several lines in main() can now be shared among linear and logistic regression, changing almost identical code to identical code.



git-svn-id: svn://svn.r-forge.r-project.org/svnroot/genabel@1726 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
The change from configure option WITH_BOOST to WITH_BOOST_MATH in r1720 wasn't complete. This commit fixes that. The most important part I forgot was to propagate the WITH_BOOST_MATH option to src/Makefile.am, so in the end the -DWITH_BOOST_MATH flag was never set.


git-svn-id: svn://svn.r-forge.r-project.org/svnroot/genabel@1727 edb9625f-4e0d-4859-8d74-9fd3b1da38cb