MCPC builds now clean before generating
added repos to all projects
hacked eclipse to have more linked sources and stuff
account for InputFIles annotations
should not have broken from the standards before

moved everything back to the conf folder. I have employed some extra
stuff to make sure that backward compatability is maintained.
derped on reflection
changelog now goes to output file
fixed weird FileNotFound error with CSVs
apperantly that broke stuff
Fixed wrong linked resource in Forge project and cleaned up the dev build.gradle generator slightly. Still bugged.
Properly fix dev workspaces, will still have duplicate issues if adding multiple paths with 'main/java'.
Change access in both inner and outter classes in the exceptor, Closes #59
certified and tested decompWorkspace overhaul
made flatfile repos accesible to all projhects
attempted some fixes for intellij

*shakes fist at intellij* It hates me...
moves getJavadocs to forge plugin fixes #61
hopefully fixed all issues with decomp workspace
added MC dep to a configuration thats not compile
+ debug code & potential fix for flat repo
teeny bit different debug code