[TEST] extend test
[FIX] add ms1 scores to tsv output
[BUILD,INTERNAL] add macro for OpenSwath assertions
[FIX] do not add xic of the precursor chromaotogram to total
[FEATURE] compute second score for isotope overlap

- also compute maximal ratio score
- use the maximal ratio for precursor based scoring
[TEST,FIX] fix DIAScoring test
[TEST] additional tests for MS1 based scores

- also test isotope overlap score on MS1 level
[FEATURE] new CLI flag for using MS1 traces
[FIX] fix deleted test from ef9e6684be4959f909d7b364fd521ce395e3976a
[TEST] test with and without MS1 precursor trace
[FIX] remove non-working tests again
[FEATURE] also write out chromatograms to mzML
[DOC] add documentation about deprecated methods
[FIX] also output MS1 features
[TEST] fix tests