Separate commands for gold evaluations.  Also consolidate the germline/somatic wrappers into a ModelReport command.
Separate commands for gold evaluations.  Also consolidate the germline/somatic wrappers into a ModelReport command. This time with the new wrappers added.
Add the homopolymer filter/expert to the somatic indel report.
Updated class browser cache.
Updated `genome` tab completion.
class to generate directory of vcf symlinks for data transfer
sanitize file names and clean up some of the variable names.
D:Allocation directly delete archived allocations
D:A extract _delete_timeline_events
D:A delete timeline events when deleting archived allocation
whitespace
D:A delete archive inside commit observer
D:A move duplicate lines out of if/else
D:A extract get_deletion_observers
D:A bugfix - invalid test syntax
D:A bugfix - test whether $directory is a dir

`-a` seems to test whether it's a file or directory, which does not seem
to be the intent.
D:A notify of failure when `rm` from tape fails
Merge branch 'master' of https://github.com/genome/genome into vcf-submission