Merge pull request #1 from bemese/master

BMS changes
recompiled for first review
converted appendix-calv to 80 character max line width
new compile
starting transcription of notebook stuff
added in notebook transcription. ready to merge with bemese/master
merged bemese/master
Merge branch 'bemese-master'
fixed hyperref warnings and cleaned up merge

ready to make a pull request to bemese
Merge pull request #1 from roguephysicist/master

bemese/master merged, first draft complete