STORM-492: Fixed bug from tracked-wait / Added time-ms to trackedWait

https://issues.apache.org/jira/browse/STORM-492

1. bug from tracked-wait 
"tracked-wait" always uses TEST-TIMEOUT-MS whether timeout-ms has passed as a parameter or not.

2. Testing.trackedWait
trackedWait with timeout-ms parameter does not exist, so I added one.
@HeartSaVioR Let's go with an environment variable. In my testing I found that the way the clojure maven plugin launches java, it clobbers and `-D` arguments passed in.