Merge branch 'dev'
updated script for submitting simulation according to the new tree file structure
changed submitall to submitsim script
added new definitions to the .gitignore file
updated main.f90 to read the new format of the input file
updated main.f90 such that now it can read different frequencies and tau for pump and probe pulse independently
updated createinput to generate the new types of input files
Merge branch 'master' into dev