[SPARK-3690] Closing shuffle writers we swallow more important exception

Author: epahomov <pahomov.egor@gmail.com>

Closes #2537 from epahomov/SPARK-3690 and squashes the following commits:

a0b7de4 [epahomov] [SPARK-3690] Closing shuffle writers we swallow more important exception
[SPARK-1484][MLLIB] Warn when running an iterative algorithm on uncached data.

Add warnings to KMeans, GeneralizedLinearAlgorithm, and computeSVD when called with input data that is not cached. KMeans is implemented iteratively, and I believe that GeneralizedLinearAlgorithm’s current optimizers are iterative and its future optimizers are also likely to be iterative. RowMatrix’s computeSVD is iterative against an RDD when run in DistARPACK mode. ALS and DecisionTree are iterative as well, but they implement RDD caching internally so do not require a warning.

I added a warning to GeneralizedLinearAlgorithm rather than inside its optimizers, where the iteration actually occurs, because internally GeneralizedLinearAlgorithm maps its input data to an uncached RDD before passing it to an optimizer. (In other words, the warning would be printed for every GeneralizedLinearAlgorithm run, regardless of whether its input is cached, if the warning were in GradientDescent or other optimizer.) I assume that use of an uncached RDD by GeneralizedLinearAlgorithm is intentional, and that the mapping there (adding label, intercepts and scaling) is a lightweight operation. Arguably a user calling an optimizer such as GradientDescent will be knowledgable enough to cache their data without needing a log warning, so lack of a warning in the optimizers may be ok.

Some of the documentation examples making use of these iterative algorithms did not cache their training RDDs (while others did). I updated the examples to always cache. I also fixed some (unrelated) minor errors in the documentation examples.

Author: Aaron Staple <aaron.staple@gmail.com>

Closes #2347 from staple/SPARK-1484 and squashes the following commits:

bd49701 [Aaron Staple] Address review comments.
ab2d4a4 [Aaron Staple] Disable warnings on python code path.
a7a0f99 [Aaron Staple] Change code comments per review comments.
7cca1dc [Aaron Staple] Change warning message text.
c77e939 [Aaron Staple] [SPARK-1484][MLLIB] Warn when running an iterative algorithm on uncached data.
3b6c511 [Aaron Staple] Minor doc example fixes.
[SPARK-3584] sbin/slaves doesn't work when we use password authentication for SSH

Author: Kousuke Saruta <sarutak@oss.nttdata.co.jp>

Closes #2444 from sarutak/slaves-scripts-modification and squashes the following commits:

eff7394 [Kousuke Saruta] Improve the description about Cluster Launch Script in docs/spark-standalone.md
7858225 [Kousuke Saruta] Modified sbin/slaves to use the environment variable "SPARK_SSH_FOREGROUND" as a flag
53d7121 [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into slaves-scripts-modification
e570431 [Kousuke Saruta] Added a description for SPARK_SSH_FOREGROUND variable
7120a0c [Kousuke Saruta] Added a description about default host for sbin/slaves
1bba8a9 [Kousuke Saruta] Added SPARK_SSH_FOREGROUND flag to sbin/slaves
88e2f17 [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into slaves-scripts-modification
297e75d [Kousuke Saruta] Modified sbin/slaves not to export HOSTLIST
SPARK-2634: Change MapOutputTrackerWorker.mapStatuses to ConcurrentHashMap

MapOutputTrackerWorker.mapStatuses is used concurrently, it should be thread-safe. This bug has already been fixed in #1328. Nevertheless, considering #1328 won't be merged soon, I send this trivial fix and hope this issue can be solved soon.

Author: zsxwing <zsxwing@gmail.com>

Closes #1541 from zsxwing/SPARK-2634 and squashes the following commits:

d450053 [zsxwing] SPARK-2634: Change MapOutputTrackerWorker.mapStatuses to ConcurrentHashMap
[SPARK-3686][STREAMING] Wait for sink to commit the channel before check...

...ing for the channel size.

Author: Hari Shreedharan <hshreedharan@apache.org>

Closes #2531 from harishreedharan/sparksinksuite-fix and squashes the following commits:

30393c1 [Hari Shreedharan] Use more deterministic method to figure out when batches come in.
6ce9d8b [Hari Shreedharan] [SPARK-3686][STREAMING] Wait for sink to commit the channel before checking for the channel size.