removed conversion
start longDist, examples failing
working on converting examples
subscripting seems to work now, at least in examples
processSubscript and converting combineDists and meanPairwiseDist to the longDist framework
first R CMD check pass on name branch
small
minor bugs and profiling
I am a complete idiot and have no bussiness doing what I'm doing
pull out diversities calculation
oops
permute, reorder.poly.data.frame, and subscript.default bug fix
move from reorder to reOrder
reOrder.phylo
as.dist.longDist
subscript.dist
consolidate subscript method help files