sjn added PINDEL

#----------------------------PINDEL-------------------------------------#
# http://gmt.genome.wustl.edu/pindel/current/install.html

RUN cd /usr/local/pipeline \
&& git clone git://github.com/genome/pindel.git \
&& cd pindel \
&& ./INSTALL /usr/local/pipeline/samtools-0.1.19/bin;