Add details to comment about the format of the parser output file. While here, fix vertical alignment of comment lines.
Replace XXX comments with explaination of what is going on, and change code to do 'the right thing'. While here, rename get_ner to get_feature, which is more descriptive...or is it?
Add comments and rewrite one function to be more easy to understand, hopefully without introducing bugs
Add features
Fix spacing
Add hpoterms_mentions.is_correct to the schema. While here, fix spacing and remove now unneeded argument to udf
Add some basic features. While here, remove unused imports.
Update to reflect the new world order.
Fix syntax and add inference rule to check HPO terms mentions.
Fix function name
Uncomment serialization of object. Fix imports.
Add relation extractor for gene <-> HPO term relations.
Add object column to mentions table and create gene_hpoterm_relations table.
Add extractor for gene <-> HPO term relations and is_correct variable for those relations in the schema, and corresponding inference rule.
Start actually writing the relation extractor for gene <-> HPO term relations.
Add comment to a function
Add some more features
Fixed indices
Add comments at the top of functions.