Initial import of //depot/software/smrtanalysis/bioinformatics/tools/pbdagcon/ from the state at revision #head
Merge branch 'mainline'
Embed relevant support projects

As we continue to evolve the BLASR API pblibblasr is being deprecated in
favor of the presently embeded reference to alignment and pbdata.  These
are part of a larger code reorg to make long overdue updates to
pbdagcon.
Makefile cleanup

Need a bit more flexibility during builds with the github reorg.
Merge branch 'mainline'
Fix build/pre-requisite section