The Registry should be verbose if the debug flag is set
Should keep the link to the Transcript object
Preloads the transcripts and the exons
There should be a warning in the log_message table
Force the creation of a child job even if the library is already present
Stable IDs must be unique across the whole set of species
Stop codons should be considered as "sequence" and not "gaps"
Merge remote-tracking branch 'github/release/75'

* github/release/75:
  Stop codons should be considered as "sequence" and not "gaps"
  Stable IDs must be unique across the whole set of species
  Force the creation of a child job even if the library is already present
  There should be a warning in the log_message table
  Preloads the transcripts and the exons
  Should keep the link to the Transcript object
  The Registry should be verbose if the debug flag is set

Conflicts:
	modules/Bio/EnsEMBL/Compara/DBSQL/MemberAdaptor.pm
	modules/Bio/EnsEMBL/Compara/RunnableDB/LoadMembers.pm
	modules/Bio/EnsEMBL/Compara/SeqMember.pm
MemberSet had to be imported
Added missing SQL_TYPE
Tidied-up the parameters for the species-tree input files
New option to reroot the tree in GenericRunnable