Preparing pom.xml for OSS Sonatype release
Resolving problem introduced during rebase
Package rename and moving files
Fixing README.txt
Moving forgotten test files
Preparing snapshot release
Fixing some javadoc warnings and pom file
Added submodule htsjdk
Added pom and script for cofoja, htsjdk commits
Update htsjdk to snapshot version
Adding exclusion of testng since it breaks our tests
Deleting scripts since they are not needed anymore
Added examples for BAM and VCF
Adding note about examples to README.txt
Trying to fix cofoja snapshot
Changing HTSJDK version, removing snapshot repo
Changes to submodule
Merge pull request #9 from AndreSchumacher/sonatype_release

Preparing pom.xml for OSS Sonatype release