Merge pull request #1 from carlacummins/master

PathFind v1 complete
Merge pull request #2 from carlacummins/master

Updated pseudogenome option in snpfind
Merge pull request #3 from carlacummins/master

Removed personal libs
Merge pull request #4 from carlacummins/master

Bug fixes
Merge pull request #5 from carlacummins/master

reffind minor edit
Merge pull request #6 from carlacummins/master

Removed debugging statement
Merge pull request #7 from carlacummins/master

Minor updates
Merge pull request #8 from carlacummins/master

Fixed delimiters in stats output
Merge pull request #9 from carlacummins/master

Updated mapfind test
Merge pull request #10 from carlacummins/master

Updated tests and stats
Merge pull request #11 from carlacummins/master

Bug fixes
Merge pull request #12 from carlacummins/master

Bug fixes
Merge pull request #13 from carlacummins/master

Updated symlink location
Merge pull request #14 from carlacummins/master

Updated symlink destination
Merge pull request #15 from carlacummins/master

Updates and bug fixes
Merge pull request #16 from carlacummins/master

Updates
Merge pull request #17 from carlacummins/master

Fixed sorting error when plex number is missing
Merge pull request #18 from carlacummins/master

Fixed infofind sorting problem
Merge pull request #19 from carlacummins/master

Fixed error on reference filter
create temp dir in cwd