Adding new Apache configuration.

The old site config used /var/www/html as a root.
Updated Documentation and added examples.

Took some of the guesswork out of mapping ports and getting container ids.
Refactored project layout.

There's probably going to be more scripts and config files added to this, it might get messy.
Merge pull request #12 from elsonrodriguez/master

Fixed Functionality, Updated Documentation, Refactored Project Layout