fix command line generation, add filter and change_format options, add macros, add parameter help ...
remove debug lines
Add advanced option into a special advanced settings select-box
subcommands are separated by : not by !
add opotional argument to all parameters and fix a bug with in_type
add opotional argument to all parameters and fix a bug with in_type
insert input parameters at the top of the Galaxy wrapper
style fixes
style fixes
implement recursive lookup for the entire parameter name (support for deeply nested parameters)
reformat the wrapper output with -w argument
reformat the wrapper output with -w argument
disable --version in version_command, it is not working in OpenMS
disable --version in version_command, it is not working in OpenMS
disable --version in version_command, it is not working in OpenMS
revert the change of remove ":" as default value
fix boolean parameters in the commandline and make use of truevalue
remove debug statement