Arctic domain compiles and runs.
Adding RUNOFF_SSH from Paul Budgell.
Updated code compiles, need to try ntimesteps in main2/3d.

Conflicts:

	ROMS/Utility/read_phypar.F
Added NWGOA domain and some WET_DRY changes.

Conflicts:

	Apps/Arctic/ana_hmixcoef.h
	Apps/Arctic/ocean_arctic2.in
	ROMS/Nonlinear/Biology/bestnpz_inp.h
	ROMS/Nonlinear/Biology/goanpz_inp.h
	ROMS/Nonlinear/Biology/umaine_inp.h
src:ticket:626

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1556 f091316a-d328-0410-a40a-876eff57d070
src:ticket:627

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1559 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/External/da_ocean.tmp
	ROMS/External/nl_ocean.tmp
	ROMS/External/ocean_basin.in
	ROMS/External/ocean_benchmark1.in
	ROMS/External/ocean_benchmark2.in
	ROMS/External/ocean_benchmark3.in
	ROMS/External/ocean_bio_toy.in
	ROMS/External/ocean_bl_test.in
	ROMS/External/ocean_canyon2d.in
	ROMS/External/ocean_canyon3d.in
	ROMS/External/ocean_channel.in
	ROMS/External/ocean_coupling_test.in
	ROMS/External/ocean_damee_4.in
	ROMS/External/ocean_double_gyre.in
	ROMS/External/ocean_estuary_test.in
	ROMS/External/ocean_flt_test2d.in
	ROMS/External/ocean_flt_test3d.in
	ROMS/External/ocean_grav_adj.in
	ROMS/External/ocean_inlet_test.in
	ROMS/External/ocean_kelvin.in
	ROMS/External/ocean_lab_canyon.in
	ROMS/External/ocean_lake_signell.in
	ROMS/External/ocean_lmd_test.in
	ROMS/External/ocean_overflow.in
	ROMS/External/ocean_riverplume1.in
	ROMS/External/ocean_riverplume2.in
	ROMS/External/ocean_seamount.in
	ROMS/External/ocean_sed_test1.in
	ROMS/External/ocean_sed_toy.in
	ROMS/External/ocean_shoreface.in
	ROMS/External/ocean_soliton.in
	ROMS/External/ocean_test_chan.in
	ROMS/External/ocean_test_head.in
	ROMS/External/ocean_upwelling.in
	ROMS/External/ocean_wc13.in
	ROMS/External/ocean_weddell.in
	ROMS/External/ocean_windbasin.in
	ROMS/Functionals/ana_hmixcoef.h
	ROMS/Functionals/ana_m2clima.h
	ROMS/Functionals/ana_m3clima.h
	ROMS/Functionals/ana_nudgcoef.h
	ROMS/Functionals/ana_ssh.h
	ROMS/Functionals/ana_tclima.h
	ROMS/Functionals/analytical.F
	ROMS/Include/cppdefs.h
	ROMS/Include/globaldefs.h
	ROMS/Modules/mod_arrays.F
	ROMS/Modules/mod_clima.F
	ROMS/Modules/mod_mixing.F
	ROMS/Modules/mod_ncparam.F
	ROMS/Nonlinear/Biology/nemuro_inp.h
	ROMS/Nonlinear/get_data.F
	ROMS/Nonlinear/ini_fields.F
	ROMS/Nonlinear/initial.F
	ROMS/Nonlinear/pre_step3d.F
	ROMS/Nonlinear/set_data.F
	ROMS/Nonlinear/set_tides.F
	ROMS/Nonlinear/step3d_t.F
	ROMS/Representer/rp_set_data.F
	ROMS/Utility/check_multifile.F
	ROMS/Utility/checkdefs.F
	ROMS/Utility/close_io.F
	ROMS/Utility/def_info.F
	ROMS/Utility/inp_par.F
	ROMS/Utility/read_phypar.F
	User/External/ocean.in
	User/External/ocean_adria02.in
	User/External/ocean_cblast.in
	User/External/ocean_eac_4.in
	User/External/ocean_eac_8.in
	User/External/ocean_ias.in
	User/External/ocean_ias_40.in
	User/External/ocean_natl.in
	User/External/ocean_nena.in
	User/External/ocean_nj_bight.in
	User/External/ocean_scb.in
	User/External/ocean_sw06_coarse.in
	User/External/ocean_sw06_fine.in
	User/Functionals/ana_hmixcoef.h
	User/Functionals/ana_nudgcoef.h

Conflicts:

	Apps/ARC_NATL/ana_hmixcoef.h
	Apps/ARC_NATL/ocean_arc_natl.in
	Apps/Arctic/ana_hmixcoef.h
	Apps/Arctic/ana_nudgcoef.h
	Apps/Arctic/ocean_arctic.in
	Apps/Arctic/ocean_arctic2.in
	Apps/BEN1/ana_hmixcoef.h
	Apps/BEN1/ana_nudgcoef.h
	Apps/BEN1/ocean_ben1.in
	Apps/Bering/ana_hmixcoef.h
	Apps/Bering/cook_inlet.h
	Apps/Bering/ocean_bering.in
	Apps/Bering/ocean_bering2d.in
	Apps/Bering/ocean_ci.in
	Apps/Bering_10k/ocean_bering.in
	Apps/Bering_box/ocean_bb.in
	Apps/Bering_strait/ocean_bering.in
	Apps/Bering_strait/ocean_bering2d.in
	Apps/CCS1/ana_nudgcoef.h
	Apps/CCS1/ana_sponge.h
	Apps/CCS1/ocean_ccs1.in
	Apps/CGOA/ana_hmixcoef.h
	Apps/CGOA/ana_sponge.h
	Apps/CGOA/ocean_cgoa.in
	Apps/CORAL/ana_nudgcoef.h
	Apps/CORAL/ana_sponge.h
	Apps/CORAL/ocean_CORAL.in
	Apps/Caspian/ocean_caspian.in
	Apps/Chukchi/ana_hmixcoef.h
	Apps/Chukchi/ana_nudgcoef.h
	Apps/Chukchi/ocean_chukchi.in
	Apps/Circle/ocean_circle.in
	Apps/GISS_AOM/ana_hmixcoef.h
	Apps/GISS_AOM/ana_nudgcoef.h
	Apps/GISS_AOM/ocean_giss_aom_era40.in
	Apps/GLOBAL_20KM/ocean_global_20km_A.in
	Apps/GLOBAL_20KM/ocean_global_20km_K.in
	Apps/Isomip/ocean_isomip.in
	Apps/Meddy/ocean_meddy.in
	Apps/NEP/ana_nudgcoef.h
	Apps/NEP/ana_sponge.h
	Apps/NEP/ocean_nep.in
	Apps/NEP/ocean_nep4.in
	Apps/NEP/ocean_nep5.in
	Apps/NEP/ocean_nep6.in
	Apps/NWA/ana_sponge.h
	Apps/NWA/ocean_NWA.in
	Apps/SCS/ocean_scs.in
	Apps/STORFJORD/ana_nudgcoef.h
	Apps/STORFJORD/ocean_storfjord.in
	Apps/Tide_bay/ocean_bay.in
	Apps/WBC/ocean_wbc_1.in
	Apps/WBC/ocean_wbc_2.in
	Apps/WBC/ocean_wbc_3.in
	ROMS/External/da_ocean.tmp
	ROMS/External/nl_ocean.tmp
	ROMS/External/ocean_basin.in
	ROMS/External/ocean_benchmark1.in
	ROMS/External/ocean_benchmark2.in
	ROMS/External/ocean_benchmark3.in
	ROMS/External/ocean_bio_toy.in
	ROMS/External/ocean_bl_test.in
	ROMS/External/ocean_canyon2d.in
	ROMS/External/ocean_canyon3d.in
	ROMS/External/ocean_channel.in
	ROMS/External/ocean_coupling_test.in
	ROMS/External/ocean_damee_4.in
	ROMS/External/ocean_dogbone_refined.in
	ROMS/External/ocean_double_gyre.in
	ROMS/External/ocean_estuary_test.in
	ROMS/External/ocean_flt_test2d.in
	ROMS/External/ocean_flt_test3d.in
	ROMS/External/ocean_grav_adj.in
	ROMS/External/ocean_inlet_test.in
	ROMS/External/ocean_kelvin.in
	ROMS/External/ocean_lab_canyon.in
	ROMS/External/ocean_lake_signell.in
	ROMS/External/ocean_lmd_test.in
	ROMS/External/ocean_overflow.in
	ROMS/External/ocean_riverplume1.in
	ROMS/External/ocean_riverplume2.in
	ROMS/External/ocean_seamount.in
	ROMS/External/ocean_sed_test1.in
	ROMS/External/ocean_sed_toy.in
	ROMS/External/ocean_shoreface.in
	ROMS/External/ocean_soliton.in
	ROMS/External/ocean_test_chan.in
	ROMS/External/ocean_test_head.in
	ROMS/External/ocean_upwelling.in
	ROMS/External/ocean_wc13.in
	ROMS/External/ocean_weddell.in
	ROMS/External/ocean_windbasin.in
	ROMS/Functionals/ana_hmixcoef.h
	ROMS/Functionals/ana_m2clima.h
	ROMS/Functionals/ana_m3clima.h
	ROMS/Functionals/ana_nudgcoef.h
	ROMS/Functionals/ana_ssh.h
	ROMS/Functionals/ana_tclima.h
	ROMS/Nonlinear/initial.F
	ROMS/Nonlinear/set_tides.F
	ROMS/Representer/rp_set_data.F
	ROMS/Utility/read_phypar.F
	User/External/ocean.in
	User/External/ocean_adria02.in
	User/External/ocean_cblast.in
	User/External/ocean_eac_4.in
	User/External/ocean_eac_8.in
	User/External/ocean_ias.in
	User/External/ocean_ias_40.in
	User/External/ocean_natl.in
	User/External/ocean_nena.in
	User/External/ocean_nj_bight.in
	User/External/ocean_scb.in
	User/External/ocean_sw06_coarse.in
	User/External/ocean_sw06_fine.in
	User/Functionals/ana_hmixcoef.h
	User/Functionals/ana_nudgcoef.h
src:ticket:629

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1561 f091316a-d328-0410-a40a-876eff57d070
src:ticket:630

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1562 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/Modules/mod_scalars.F
	ROMS/Nonlinear/initial.F

Conflicts:

	ROMS/Modules/mod_scalars.F
	ROMS/Nonlinear/initial.F
src:ticket:631

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1563 f091316a-d328-0410-a40a-876eff57d070
src:ticket:632

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1564 f091316a-d328-0410-a40a-876eff57d070
Tiny exchange fix to User/Functionals/ana_nudgcoef.h
src:ticket:622

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1554 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/External/ocean_lake_jersey.in
	ROMS/External/sediment_lake_jersey.in
	ROMS/Utility/check_multifile.F
	ROMS/Utility/read_phypar.F
	ROMS/Version
src:ticket:624

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1555 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/Nonlinear/nesting.F
	ROMS/Utility/checkdefs.F
src:ticket:626

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1556 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/Utility/check_multifile.F
src:ticket:629

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1561 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/Version
src:ticket:630

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1562 f091316a-d328-0410-a40a-876eff57d070
src:ticket:631

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1563 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	User/Functionals/ana_nudgcoef.h
src:ticket:632

git-svn-id: https://www.myroms.org/svn/omlab/branches/arango@1564 f091316a-d328-0410-a40a-876eff57d070

Conflicts:

	ROMS/Utility/check_multifile.F
Smoking out more IstrR from the Apps directory.