Use build id to name vcfs. This keeps file names unique between exome/wgs
Stop using patient counter in vcf name. Use vcf_suffix instead, default to build id.
Updated capture reagent hash. Now dynamically generated.

There are no longer hardcoded '+' combinations of capture sets, rather
the pieces are assembled dynamically.
Test a capture reagent with multiple sub-parts
Fix test data
Remove unused probe_file
SeparatedValueReader dies when columns don't match

otherwise when you are looping through a file using next,
it will just truncate the file and print an error message,
without any other clue that something is wrong.
Updated class browser cache.
Updated `genome` tab completion.
Merge pull request #270 from gsanders/tcga

Tcga metadata update
Make sure we specify joinx version for merge
Merge pull request #279 from apregier/make_svr_die

SeparatedValueReader dies when columns don't match
Fix documentation string for caf
adding additional documentation
acmg report only needed by germline plans, not somatic plans
dbsnp af is reported as ratio, not percent
merged reports don't have plan or legend files
whitespace for readability
Merge pull request #298 from chrisamiller/master

adding additional documentation
Merge pull request #297 from davidlmorton/joinx-version

Make sure we specify joinx version for merge