Merge pull request #2 from jmacdon/master

Mods to createChrDict
Commit made by the Bioconductor Git-SVN bridge.
Consists of 2 commit(s).

Commit information:

    Commit id: 4dda818afbcaf99f9c34821d668dd33c122fe044
    Commit message:
    Modified createChrDict so chromosomes are ordered even when there are alternative haplotypes and contigs
    Committed by Jim MacDonald <jmacdon at ogopogo.deohs.washington.edu>
    Commit date: 2014-02-27T10:39:57-08:00

    Commit id: ee087e6e3fa74d7d6757d80dc5d39093fe8956e5
    Commit message:
    Merge pull request #2 from jmacdon/master

    Mods to createChrDict
    Committed by Benilton Carvalho <beniltoncarvalho at gmail.com>
    Commit date: 2014-02-28T01:59:50-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pdInfoBuilder@86920 bc3139a8-67e5-0310-9ffc-ced21a209358
Fixes for miRNA 4.0 arrays