Fixed bug in VCF stats when checking if a multiallelic variant is an indel
Allow to configure the CellBase WAR file to use
switched .gitmodules url from ssh to https
extended SConstruct to use CPATH and LIBRARY_PATH as include an lib dirs
Scripts ready for version 2.0, except for the changelog in the RPM spec
Added checks to environment variables search in SConsctruct. hpg-libs checked out using HTTPS instead of SSH
Merge branch 'pescobar-build-fix' into next