Merge branch 'feature_plink'
Merge branch 'feature_plink'
mut2xls able to pick only 'shared' mutations
add inclusion criteria to log out of mut2xls
add log sheet to muts reps xls
gen_vcf_gt accept file as col_config
cal_mut_stat can accept multiple regions as input
add log features to script_gen_sa
improve logging power of gen_sa to capture stderr produced by the third party. Note I need to do that with all other components
Merge branch 'feature_muts_reps'
rm dev_tty from gen_sa
clean up the code and move common functions from mut_reps series out to cmm_functions.sh
Merge branch 'feature_muts_reps'
clean up the code and move common functions from mut_reps series out to cmm_functions.sh
Merge branch 'feature_muts_reps'
fix bug running log file not exist in serv version
Merge branch 'feature_muts_reps'
remove common functions from plink series. Instead, use common function from cmm_functions.sh
correct the indentation of job_submit_cmd of plink reports