Working variant notation conversion to CHROM #, COORDINATE, REF, ALT in output files. Need to ensure DMD and empty entries are unaffected by changes.
Added consistent ordering of columns in output files. Still needs improved robustness. Minor refactoring and added test cases and files for new functions.
Removed '\' from all comment blocks. Do not believe they are necessary.
Simplified implementation of get_remapping_results.
Minor refactoring and updated documentation. Bug fix: line break in code was erased when getting rid of back-slashes in code comments, causing syntax error.
User now required to explicitly set gene ID prior to other function calls. Unit tests and script updated accordingly. Minor refactoring and almost entirely complete documentation.
Minor fix to documentation (specifying that set_gene_id is required prior to calling other functions.
Merge branch 'master' of https://github.com/andrewhill157/leiden-clean-up