Sim arg.
Bugfix on parameters.
Merge branch 'master' of github.com:kbase/genome_annotation
Fix typo.
Update to latest. Includes support for tagging and error-destination chaining.
Mods for more stderr tracking.
Fix params for sim-based annotation.
Remove stray variable.
The big rename.
Plus eliminate a debug print.
Update commands for the renamed scripts.
Replace references of rast2- with rast-.
Update default pipeline to include glimmer3, similarity-based annotation, and overlap resolutio.
Fix glimmer3 default parameters.
Fix context setting for batch runs.
Doh, bless bug fix.
Final batch fixes.
Thread original submission filename through from batch submission to output retrieval.
Add filename to status messages.
Add insertion sequence support.
Add update-functions, fix add-features.