accepts json string and object-based format

- cli create_parameter_sets accepts not only json file path but json string
- input parameter sets can be specified by Hash
apply collection aggregate on figure viewer
add run option for create_parameter_set

- cli create_parameter_set accepts '--run' option
  - runs are created for the specified parameter sets
  - parameters for runs can be given by the --run option
a bug is fixed: download modified svg on color and scale
Merge pull request #228 from crest-cassia/bugfix_download_modified_svg_file

a bug is fixed: download modified svg on color and scale
bug fix: when analysis or run does not exist

fixed a bug that an exception is thrown when run or analysis is not found
changed the opacity of tooltip image
Merge pull request #227 from crest-cassia/change_parameter_set_controller_specification_for_figure_viewer

apply collection aggregate on figure viewer
build doc for v1.12.0
make a prototype
command line data is attached on html data attribute
display CLI command for analyses
add test for analyzer_version
bug fix
replace 'Edit' with 'CLI'
Merge pull request #234 from crest-cassia/display_CLI_commands_on_web_UI

Display cli commands to destroy and replace runs/analyses on web ui
Merge branch 'Development' into enhance_cli_creating_parameter_sets

Conflicts:
	lib/cli/oacis_cli_common.rb
	lib/cli/oacis_cli_parameter_set.rb
	lib/cli/oacis_cli_run.rb
fixed a bug