bug fixes. adding html format to some  tools.
Merge branch 'master' of https://github.com/chipster/chipster.git
gtf sort to cufflinks
Merge branch 'master' into release
gzip detection added to the EMBOSS and BLAST tools.
Merge branch 'master' of https://github.com/chipster/chipster.git
Merge branch 'master' into release
Build 2.11.0
Change 2.10 to 2.11 in update-exec.sh
Set version to 2.11.1
incresed dimont max memory to 8G
Merge branch 'release'
Merge branch 'master' into data_beta

Conflicts:
	build.xml
	src/main/resources/build.number
	src/main/resources/version.number