update ez_setup.py in prep for our v0.8 release
Merge pull request #264 from ged-lab/update-ez_setup

update ez_setup.py in prep for our v0.8 release
add known issue
Revert "add known issue"

This reverts commit f511f6cdb5f60affef89a770ba90a8e0187c1675.
Revert "Revert "add known issue""

This reverts commit e103621f86e09e10b4f661b8a2ee4dde9f7c5603.
add FASTQ multithreaded parsing issue
watch out for those truncated hashfiles
update install. fix doc errors
doc/install.txt explanation
Merge pull request #286 from ged-lab/install-update

update install. fix doc errors
Merge branch 'master' into known-issues
acknowledge new known-issues.txt document
Merge pull request #284 from ged-lab/known-issues

Add known issues
Merge branch 'master' into output_naming1

Conflicts:
	doc/index.txt