Merge branch 'devel' into fluidigm
Integrating Fluidigm into ready_infinium.pl WIP; script now requires testing
Updated version to 1.3.0
Check --manifest CLI argument
Made --dbfile argument mandatory in ready_infinium.pl

Pass a logger explicity into the various Loggable objects used.
Make the warehouse query stubs used in tesing validate their inputs.
Avoid undef warning in sprintf arguments

Improved log messages when superseding metadata
Enabled iRODS::Lister to return ACLs

Added wrapper for baton json-chmod
Added getting and setting of iRODS access control lists using the
baton JSON client.

Added get_/set_permissions methods and option to recursively set
permissions.
Modified metadata updaters to acces lists of iRODS paths on STDIN.
Merge branch 'fluidigm-wip' into devel
Merge pull request #215 from keithj/devel

iRODS improvements to permissions handling
Added missing get_permissions method to Collection

Added a check for undef as a method argument
Moved some methods from illuminus.pl script to Illuminus.pm and added
tests.

Added missing Call.pm
Repaired missing export statement
Merge pull request #216 from keithj/devel

Fluidigm integration and Collection bug fix
New prefilter report and QC refactoring
Fixed typo and changed run() arguments
Edited comments
Merge pull request #217 from iainrb/devel

New prefilter report and QC refactoring