STL tags are included elsewhere
Changed stdout output in scripts to stderr;
updated changelog
Updated scripts to use add_threading_args from khmer_args
Removed khmer/threading_args.py as it is now depreicated and irrelephant.
Spacing fix
pep8
ignore Doxyfile
Updated changelog
Chanelog formatting
Fixed for pep8
polished for pylint
Updated scripts to use add_threading_args from khmer_args
Removed khmer/threading_args.py as it is now depreicated and irrelephant.
Spacing fix
Resolved missed merge conflicts. Updated formatting. Made mental notes.
add n_kmers() to CountingHash
n_kmers -> n_unique_kmers
Added screed and read_parser stream testing. Currently marked as known_failing since they fail with existing systems. non-gzip streaming works in screed 0.7.1
Reverted inadvertent change to tests/test_graphs.py
Cleaned up formatting in streaming tests.
Renamed streaming test helper functions to something more explicit.
Cleaned up fifo/blk testing logic structure to be cleaner
Added docstrings to helper functions to better explain functionality
Cleaned up some comments
Updated docstring formatting
Cleared up logical structure
updated docstring to be clearer.
Reducing import bloat