first commit
Prodigal V2.60
Prodigal V2.60 bugfix 1
Removed masking in preparation for new gap code.
Groundwork started in main.c for 3.0
deleted TTAATTAATTAA code
More organizational changes for 3.0
Added sequin table output format
Added autodetection of translation table
More autodetection of translation table stuff
First pass at new gap handling code complete
Modified gap code to be more rigorous about runs of N's
Moved stuff around plus autodetect 11/4 transtable
Updated header files to 2014
updated makefile and readme
organizational changes, headers, autodetect tt
Organizational changes to the training routines
Moved code from main into separate functions
version stuff
Penalize CDS shorter than 100 bp, was 250 bp