Sample splign output converted into BED format.
Semi-working: tries to add/subtract 1 when printing output.
Got rid of column -t
Test for splign BED output.
Fixed splign to bed conversion on the minus strand.
Reverted to old version of fix-splign-orf that works with splign output.
Updated test files.
Start always less than end.
Some modifications to the test set.
Accepts BED input.
Put dots where there are unreported values.
Handle UCSC transcript-exon identifiers.
Changed command line options: splign -> input, output -> outformat.
Changed default format of output to GFF.
A bigger (real-life) test sample for fix-splign-orf.py
Sample from the genome that covers only the needed scaffolds.
Bigger sample splign output converted into BED format.
Sensible name.
Wrapper for the test on parrot data.
Say goodbye to the TSV output.